NovaSeq 6000 Sequencing System is by far our most powerful instrument, designed to adapt to your needs so groundbreaking discoveries are always within reach. It's flexible, scalable science on your terms.
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So many ways to sequence. Scale up and down effortlessly with our improved economics and an output of up to 6 Tb and 20 B reads in < 2 days.
Go where discoveries are made. Accelerate your science with immense sequencing breadth and depth when you need it. All on one instrument.
Do what you want. Mix and match flow cell types, run one or two flow cells at a time, choose between multiple read lengths, workflows, and more.
You're in control. Improved sequencing costs via our new reagent kits. Automated flow cell loading. Open platform for build-your-own applications. We're dedicated to helping you maximize efficiency at every turn.
NovaSeq 6000 offers deeper and broader coverage through advanced applications for a comprehensive view of the genome. Unlock the full spectrum of genetic variation and biological function with high-throughput sequencing.
See All ApplicationsNovaSeq performs whole-genome sequencing more efficiently and cost-effectively than ever. Its scalable output generates up to 6 Tb and 20 billion reads in dual flow cell mode with simple streamlined automated workflows. Configure the system to sequence a trio in one day or up to 48 genomes in ~2 days for the most comprehensive coverage.
A high-performing, fast, and integrated workflow for sensitive applications such as human whole-genome sequencing or tumor-normal sequencing.
A fast, integrated workflow for a wide range of applications, from human whole-genome sequencing to amplicons, plasmids, and microbial species.
New kits feature updated reagent formulations with 2x longer shelf life and improved sequencing costs to help power your most impactful studies.
*Time per sample, assuming 30x coverage/sample
The DRAGEN Germline Pipeline v3 aligns and optionally variant calls FASTQ files, outputting a BAM, VCF, or both.
The DRAGEN Somatic Pipeline aligns and variant calls Tumor-only or Tumor/Normal FASTQ files, outputting BAM(s) and a VCF.
Representing less than 2% of the genome, WES is a cost-effective alternative to WGS. The NovaSeq System offers sequencing of up to 500 exomes in a single run using a dual S4 flow cell.
*2.5 days total prep time, 6 hours hands-on time
This kit uses a fast, user-friendly workflow. On-bead tagmentation chemistry is combined with a simplified, single hybridization protocol to reduce total workflow time.
New kits feature updated reagent formulations with 2x longer shelf life and improved sequencing costs to help power your most impactful studies.
*Time per sample, assuming 100x coverage/sample
This app aligns and optionally variant calls FASTQ, BAM or CRAM files, outputting a BAM, VCF, or both.
Detect coding and multiple forms of noncoding RNA in normal or low-quality samples. With the NovaSeq System, you can sequence up to 400 transcriptomes in a single run using a dual S4 flow cell.
Rapid library preparation from a broad range of sample types for studying the coding and non-coding transcriptome with unparalleled study flexibility.
New kits feature updated reagent formulations with 2x longer shelf life and improved sequencing costs to help power your most impactful studies.
*Time per sample, assuming 200x coverage/sample
Performs alignment, quantification, and fusion detection.
Manage Workflow
Manage your workflow seamlessly with BaseSpace Clarity LIMS or your existing LIMS system.
Prepare Libraries
Prepare libraries with a broad range of high-performance library preparation kits.
Sequence
Generate sequences with ready-to-use reagents featuring proven Illumina sequencing by synthesis chemistry.
Analyze Data
Leverage the Illumina DRAGEN Bio-IT Platform or BaseSpace Sequence Hub for accurate, rapid secondary analysis.
Interpret Results
Interpret results, get insights, and drive discovery with BaseSpace Variant Interpreter, BaseSpace Cohort Analyzer, and TruSight Software Suite.
New kits feature updated reagent formulations with 2x longer shelf life and improved sequencing costs to help power your most impactful studies.
The NovaSeq Xp workflow enables labs to load libraries directly into each lane of a NovaSeq 6000 System flow cell, without additional instrumentation.
Achieve rapid, targeted interrogation of an expansive number of target genes with exceptional capture efficiency and coverage uniformity.
A high-performing, fast, and integrated workflow for sensitive applications such as human whole-genome sequencing.
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See what's possible with the power of NovaSeq 6000 and NGS technology
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Join a community of like-minded customers using Illumina sequencers, library preparation kits, and automated data analysis to fuel groundbreaking research. Discuss best practices, troubleshoot, and collaborate with Illumina scientists, developers, and each other.
Learn MoreReagent kits for the NovaSeq 6000 System provide ready-to-use cartridge-based reagents for cluster generation and SBS.
View ProductsThe NovaSeq Xp workflow enables labs to load libraries directly into each lane of a NovaSeq 6000 System flow cell, without additional instrumentation.
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A robust, highly scalable whole-transcriptome analysis (RNA-Seq) solution for a variety of species and sample types, including human, mouse, and formalin-fixed, paraffin-embedded (FFPE) tissue.
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Prepare sequencing libraries for small genomes, PCR amplicons, plasmids, or cDNA in as little as 90 minutes, with a low DNA input requirement
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